<files>


  <file name="TAIR10_mRNA.bed.gz" title="TAIR10 mRNA" description="protein-coding gene models" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" load_hint="Whole Sequence" label_field="id"/>  

  <file name="TAIR10.bed.gz" title="TAIR10 ALL GENES" description="All gene annotations - anything with a name like AT1G12345, including transposable element genes" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>  


	<file name="TAIR10_TE_gene.bed.gz" title="TAIR10 TE gene" description="transposable element gene models" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>

	<file name="TAIR10_tRNA.bed.gz" title="TAIR10 tRNA genes" description="tRNA gene models" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>

	<file name="TAIR10_rRNA.bed.gz" title="TAIR10 rRNA genes" description="rRNA gene models" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>

	<file name="TAIR10_miRNA.bed.gz" title="TAIR10 miRNA genes" description="miRNA gene models" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>

	<file name="TAIR10_snoRNA.bed.gz" title="TAIR10 snoRNA genes" description="small nucleolar RNA gene models" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>

	<file name="TAIR10_ncRNA.bed.gz" title="TAIR10 ncRNA genes" description="small non-coding RNA gene models" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>

<file name="TAIR10_pseudogene.bed.gz" title="TAIR10 pseudogene" description="pseudogenic transcript models" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>

<file name="TAIR10_TE.bed.gz" title="TAIR10 transposable elements" description="transposable elements" url="http://www.arabidopsis.org/doc/news/breaking_news/140#id22" label_field="id"/>

  <file
    name="cold_stress/cold_control.sm.bam"
    title="RNA-Seq / Loraine Lab / Mixed Cold / SM / Reads / Control, alignments"
    description="alignments for reads that mapped once onto the genome"
    url="http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/"
  />
  <file
    name="cold_stress/cold_control.sm.bedgraph.gz"
    title="RNA-Seq / Loraine Lab / Mixed Cold / SM / Graph / Control, coverage"
    description="coverage graph for reads that mapped once onto the genome"
    url="http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/"
  />
  <file
    name="cold_stress/cold_control.mm.bam"
    title="RNA-Seq / Loraine Lab / Mixed Cold / MM / Reads / Control, alignments"
    description="alignments for reads that mapped to multiple places in the genome"
    url="http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/"
  />
  <file
    name="cold_stress/cold_control.mm.bedgraph.gz"
    title="RNA-Seq / Loraine Lab / Mixed Cold / MM / Graph / Control, coverage"
    description="coverage graph for reads that mapped to multiple places in the genome"
    url="http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/"
  />
  <file
    name="cold_stress/cold_control.bed.gz"
    title="RNA-Seq / Loraine Lab / Mixed Cold / Juncs / Control, junctions"
    description="Junctions predicted by TopHat"
  />
  <file
    name="cold_stress/cold_treatment.sm.bam"
    title="RNA-Seq / Loraine Lab / Mixed Cold / SM / Reads / Cold, alignments"
    description="alignments for reads that mapped once onto the genome"
    url="http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/"
  />
  <file
    name="cold_stress/cold_treatment.sm.bedgraph.gz"
    title="RNA-Seq / Loraine Lab / Mixed Cold / SM / Graph / Cold, coverage"
    description="coverage graph for reads that mapped once onto the genome"
    url="http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/"
  />
  <file
    name="cold_stress/cold_treatment.mm.bam"
    title="RNA-Seq / Loraine Lab / Mixed Cold / MM / Reads / Cold, alignments"
    description="alignments for reads that mapped to multiple places in the genome"
    url="http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/"
  />
  <file
    name="cold_stress/cold_treatment.mm.bedgraph.gz"
    title="RNA-Seq / Loraine Lab / Mixed Cold / MM / Graph / Cold, coverage"
    description="coverage graph for reads that mapped to multiple places in the genome"
  />
  <file
    name="cold_stress/cold_treatment.bed.gz"
    title="RNA-Seq / Loraine Lab / Mixed Cold / Juncs / Cold, junctions"
    description="Junctions predicted by TopHat"
    url="http://igbquickload.org/quickload/A_thaliana_Jun_2009/cold_stress/"
  />

       	<file name="TAIR9.bed.gz" title="TAIR9/TAIR9 ALL" description="all gene models (39,640)" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL" label_field="id"/>  
	<file name="TAIR9_mRNA.bed.gz" title="TAIR9/TAIR9 mRNA" description="protein-coding gene models (33,410)" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>  
	<file name="TAIR9_TE_gene.bed.gz" title="TAIR9/TAIR9 TE gene" description="transposable element gene models" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>
	<file name="TAIR9_tRNA.bed.gz" title="TAIR9/TAIR9 tRNA" description="tRNA gene models" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>  
	<file name="TAIR9_rRNA.bed.gz" title="TAIR9/TAIR9 rRNA" description="rRNA gene models" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>  
	<file name="TAIR9_miRNA.bed.gz" title="TAIR9/TAIR9 miRNA" description="microRNA gene models" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>  
	<file name="TAIR9_snoRNA.bed.gz" title="TAIR9/TAIR9 snoRNA" description="small nucleolar RNA gene models" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>  
	<file name="TAIR9_snRNA.bed.gz" title="TAIR9/TAIR9 snRNA" description="small nuclear RNA gene models" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>  
	<file name="TAIR9_ncRNA.bed.gz" title="TAIR9/TAIR9 ncRNA" description="non-coding RNA gene models" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>  
	<file name="TAIR9_pseudogene.bed.gz" title="TAIR9/TAIR9 pseudogene" description="pseudogenic transcript models" url="http://www.bioviz.org/igb/data.shtml#T9_bioviz_QL"/>
</files>

