com.affymetrix.genoviz.demo

Class NeoMapDemo

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Panel

java.applet.Applet

javax.swing.JApplet

com.affymetrix.genoviz.demo.NeoMapDemo

All Implemented Interfaces:

com.affymetrix.genoviz.event.NeoRubberBandListener, ActionListener, ItemListener, MouseListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer

public class NeoMapDemo
extends JApplet
implements MouseListener, ActionListener, ItemListener, com.affymetrix.genoviz.event.NeoRubberBandListener

Version:

$Id: NeoMapDemo.java 6074 2010-06-04 18:49:01Z vbishnoi $

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JApplet

JApplet.AccessibleJApplet

Nested classes/interfaces inherited from class java.applet.Applet

Applet.AccessibleApplet

Nested classes/interfaces inherited from class java.awt.Panel

Panel.AccessibleAWTPanel

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JApplet

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
NeoMapDemo()

Method Summary

Modifier and Type	Method and Description
void	actionPerformed(ActionEvent e) ActionListener interface implementation
void	addItemsDirectly()
protected void	addItemsWithDataAdapter() ----------------- Data Adapters ----------------- Adding items directly to the map or through the map's factories by specifying a start and end position works for simple annotations.
protected void	addItemsWithFactory() ------------------- Factories ------------------- Different configurations for adding items to maps can be stored in the map as factories.
protected void	addSequence() Creating a sequence item, and adding visible annotations to it
String	getAppletInfo()
void	itemStateChanged(ItemEvent e)
static void	main(String[] args)
void	mouseClicked(MouseEvent e) MouseListener interface implementation
void	mouseEntered(MouseEvent e)
void	mouseExited(MouseEvent e)
void	mousePressed(MouseEvent e)
void	mouseReleased(MouseEvent e)
void	rubberBandChanged(com.affymetrix.genoviz.event.NeoRubberBandEvent e) NeoRubberBandListener interface implementation
void	setupMenus()

Methods inherited from class javax.swing.JApplet

addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.applet.Applet

destroy, getAppletContext, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, init, isActive, isValidateRoot, newAudioClip, play, play, resize, resize, setStub, showStatus, start, stop

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, revalidate, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

NeoMapDemo

public NeoMapDemo()

Method Detail

main

public static void main(String[] args)

addItemsDirectly

public void addItemsDirectly()

addItemsWithFactory

protected void addItemsWithFactory()

------------------- Factories ------------------- Different configurations for adding items to maps can be stored in the map as factories. A map can have any number of factories, each of which can be configured to produce glyphs on the map with color, offset perpendicular to the axis, glyph class, etc. set by configuration methods similar to those of the map itself. Each factory has a String name, and can be referred to by name.

addItemsWithDataAdapter

protected void addItemsWithDataAdapter()

----------------- Data Adapters ----------------- Adding items directly to the map or through the map's factories by specifying a start and end position works for simple annotations. For more complex annotations, classes that implement the NeoDataAdapterI interface provide a more general mechanism to represent data models on the map. However, making a data adapter class requires knowledge of both the data model one wants to represent and more of the internals of the map widget. Data Adapters can be used to automate building a visual representation of datamodels. Each data adapter is specific to a particular class of data model. Once a data adapter has been constructed and added to the map, calling Map.addData(model) will represent the model in the map in a manner specific to the data adapter and its configuration.

addSequence

protected void addSequence()

Creating a sequence item, and adding visible annotations to it

getAppletInfo

public String getAppletInfo()

Overrides:

getAppletInfo in class Applet

setupMenus

public void setupMenus()

mouseClicked

public void mouseClicked(MouseEvent e)

MouseListener interface implementation

Specified by:

mouseClicked in interface MouseListener

mouseEntered

public void mouseEntered(MouseEvent e)

Specified by:

mouseEntered in interface MouseListener

mouseExited

public void mouseExited(MouseEvent e)

Specified by:

mouseExited in interface MouseListener

mouseReleased

public void mouseReleased(MouseEvent e)

Specified by:

mouseReleased in interface MouseListener

mousePressed

public void mousePressed(MouseEvent e)

Specified by:

mousePressed in interface MouseListener

rubberBandChanged

public void rubberBandChanged(com.affymetrix.genoviz.event.NeoRubberBandEvent e)

NeoRubberBandListener interface implementation

Specified by:

rubberBandChanged in interface com.affymetrix.genoviz.event.NeoRubberBandListener

actionPerformed

public void actionPerformed(ActionEvent e)

ActionListener interface implementation

Specified by:

actionPerformed in interface ActionListener

itemStateChanged

public void itemStateChanged(ItemEvent e)

Specified by:

itemStateChanged in interface ItemListener