com.affymetrix.genoviz.demo.datamodel

Class Annotation

java.lang.Object

com.affymetrix.genoviz.demo.datamodel.Annotation

All Implemented Interfaces:

AnnotationI

Direct Known Subclasses:

ScoredAnnotation, SequenceAnnotation

public class Annotation
extends Object
implements AnnotationI

Field Summary

Fields

Modifier and Type	Field and Description
protected int	end
protected boolean	forward forward is defined by (start <= end) so forward field is really just a convenience Also, because of this, setForward() should adjust the start and end as well
protected int	start
protected String	type

Constructor Summary

Constructors

Constructor and Description
Annotation()
Annotation(int start, int end)

Method Summary

Modifier and Type	Method and Description
int	getEnd()
int	getStart()
String	getType()
boolean	isForward()
void	setEnd(int end)
void	setForward(boolean forward)
void	setStart(int start)
void	setType(String type)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

start

protected int start

end

protected int end

forward

protected boolean forward

forward is defined by (start <= end) so forward field is really just a convenience Also, because of this, setForward() should adjust the start and end as well

type

protected String type

Constructor Detail

Annotation

public Annotation()

Annotation

public Annotation(int start,
                  int end)

Method Detail

getStart

public int getStart()

Specified by:

getStart in interface AnnotationI

getEnd

public int getEnd()

Specified by:

getEnd in interface AnnotationI

setStart

public void setStart(int start)

setEnd

public void setEnd(int end)

setForward

public void setForward(boolean forward)

isForward

public boolean isForward()

getType

public String getType()

setType

public void setType(String type)

toString

public String toString()

Overrides:

toString in class Object