com.affymetrix.genoviz.demo.parser

Class BedFileParser

java.lang.Object

com.affymetrix.genoviz.demo.parser.BedFileParser

public class BedFileParser
extends Object

Constructor Summary

Constructors

Constructor and Description
BedFileParser(String bedFile_URL)

Method Summary

Modifier and Type	Method and Description
static HashMap<String,Vector<BedSequence>>	getAlignment(BufferedReader chars)
void	getAlignments(URL url)
static int	getMapLength()
HashMap<String,Vector<BedSequence>>	getResults()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BedFileParser

public BedFileParser(String bedFile_URL)

Method Detail

getAlignments

public void getAlignments(URL url)

getMapLength

public static int getMapLength()

getAlignment

public static HashMap<String,Vector<BedSequence>> getAlignment(BufferedReader chars)
                                                        throws IOException

Throws:

IOException

getResults

public HashMap<String,Vector<BedSequence>> getResults()