com.affymetrix.genoviz.demo

Class NeoSeqDemo

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Panel

java.applet.Applet

com.affymetrix.genoviz.demo.NeoSeqDemo

All Implemented Interfaces:

ActionListener, ItemListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible

public class NeoSeqDemo
extends Applet
implements WindowListener, ActionListener, ItemListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.applet.Applet

Applet.AccessibleApplet

Nested classes/interfaces inherited from class java.awt.Panel

Panel.AccessibleAWTPanel

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
NeoSeqDemo()

Method Summary

Modifier and Type	Method and Description
void	actionPerformed(ActionEvent e) ActionListener Implementation
void	addBackgroundAnnotation()
void	addOutlineAnnotation()
void	changeSequence()
void	destroy()
void	exportSequenceFasta()
AppletContext	getAppletContext()
String	getAppletInfo()
URL	getCodeBase()
URL	getDocumentBase()
protected void	getGoing()
String	getParameter(String name)
void	init()
void	itemStateChanged(ItemEvent e) ItemListener Implementation
com.affymetrix.genoviz.datamodel.Sequence	loadSequence(String theRef) loads a sequence from over the network.
static void	main(String[] args)
void	paint(Graphics g)
void	printSelectionOverlappers()
void	selectAnnotation()
void	setAnnotColors(Color col)
void	setupMenus(Frame dock)
void	start()
void	stop()
void	testSelectedVisibility()
void	toFrontSelectionOverlappers()
void	windowActivated(WindowEvent e) WindowListener Implementation
void	windowClosed(WindowEvent e)
void	windowClosing(WindowEvent e)
void	windowDeactivated(WindowEvent e)
void	windowDeiconified(WindowEvent e)
void	windowIconified(WindowEvent e)
void	windowOpened(WindowEvent e)

Methods inherited from class java.applet.Applet

getAccessibleContext, getAudioClip, getAudioClip, getImage, getImage, getLocale, getParameterInfo, isActive, isValidateRoot, newAudioClip, play, play, resize, resize, setStub, showStatus

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, paramString, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, setLayout, transferFocusDownCycle, update, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, revalidate, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

NeoSeqDemo

public NeoSeqDemo()

Method Detail

init

public void init()

Overrides:

init in class Applet

getGoing

protected void getGoing()

getAppletInfo

public String getAppletInfo()

Overrides:

getAppletInfo in class Applet

start

public void start()

Overrides:

start in class Applet

stop

public void stop()

Overrides:

stop in class Applet

destroy

public void destroy()

Overrides:

destroy in class Applet

addOutlineAnnotation

public void addOutlineAnnotation()

addBackgroundAnnotation

public void addBackgroundAnnotation()

selectAnnotation

public void selectAnnotation()

toFrontSelectionOverlappers

public void toFrontSelectionOverlappers()

printSelectionOverlappers

public void printSelectionOverlappers()

setAnnotColors

public void setAnnotColors(Color col)

testSelectedVisibility

public void testSelectedVisibility()

loadSequence

public com.affymetrix.genoviz.datamodel.Sequence loadSequence(String theRef)

loads a sequence from over the network.

Parameters:

theRef - is a URL pointing to a FASTA file containing the sequence.

exportSequenceFasta

public void exportSequenceFasta()

paint

public void paint(Graphics g)

Overrides:

paint in class Container

setupMenus

public void setupMenus(Frame dock)

changeSequence

public void changeSequence()

actionPerformed

public void actionPerformed(ActionEvent e)

ActionListener Implementation

Specified by:

actionPerformed in interface ActionListener

itemStateChanged

public void itemStateChanged(ItemEvent e)

ItemListener Implementation

Specified by:

itemStateChanged in interface ItemListener

windowActivated

public void windowActivated(WindowEvent e)

WindowListener Implementation

Specified by:

windowActivated in interface WindowListener

windowDeactivated

public void windowDeactivated(WindowEvent e)

Specified by:

windowDeactivated in interface WindowListener

windowIconified

public void windowIconified(WindowEvent e)

Specified by:

windowIconified in interface WindowListener

windowDeiconified

public void windowDeiconified(WindowEvent e)

Specified by:

windowDeiconified in interface WindowListener

windowOpened

public void windowOpened(WindowEvent e)

Specified by:

windowOpened in interface WindowListener

windowClosed

public void windowClosed(WindowEvent e)

Specified by:

windowClosed in interface WindowListener

windowClosing

public void windowClosing(WindowEvent e)

Specified by:

windowClosing in interface WindowListener

getCodeBase

public URL getCodeBase()

Overrides:

getCodeBase in class Applet

getAppletContext

public AppletContext getAppletContext()

Overrides:

getAppletContext in class Applet

getDocumentBase

public URL getDocumentBase()

Overrides:

getDocumentBase in class Applet

getParameter

public String getParameter(String name)

Overrides:

getParameter in class Applet

main

public static void main(String[] args)