com.affymetrix.genoviz.demo

Class ShadowDemo

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Panel

java.applet.Applet

javax.swing.JApplet

com.affymetrix.genoviz.demo.ShadowDemo

All Implemented Interfaces:

com.affymetrix.genoviz.event.NeoRangeListener, MouseListener, MouseMotionListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, RootPaneContainer

public class ShadowDemo
extends JApplet
implements MouseMotionListener, MouseListener, com.affymetrix.genoviz.event.NeoRangeListener

Demo of "shadowing" a NeoSeq on a NeoMap via RangeChangeEvents and TransientGlyphs

Version:

$Id: ShadowDemo.java 6074 2010-06-04 18:49:01Z vbishnoi $

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JApplet

JApplet.AccessibleJApplet

Nested classes/interfaces inherited from class java.applet.Applet

Applet.AccessibleApplet

Nested classes/interfaces inherited from class java.awt.Panel

Panel.AccessibleAWTPanel

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
protected Button	addBackAnnotB
protected Button	addTextAnnotB
protected Vector	annotations
protected Color	back_annot_color
protected Label	firstL
protected Choice	fontC
protected Label	fontL
protected Label	lastL
protected Panel	mapframe
protected com.affymetrix.genoviz.widget.NeoMap	mapview
protected double	mouse_offset
protected String	newseq
protected boolean	num_left
protected Choice	orientC
protected Label	orientL
protected Button	removeAnnotB
protected Button	selectedB
protected String	seq
protected String	seq2
protected String	seq3
protected com.affymetrix.genoviz.widget.NeoSeq	seqview
protected com.affymetrix.genoviz.bioviews.GlyphI	shadowRect
protected Label	sizeL
protected TextField	sizeT
protected Label	spacingL
protected TextField	spacingT
protected Label	stripeL
protected TextField	stripeT
protected Color	text_annot_color
protected Button	visibleB

Fields inherited from class javax.swing.JApplet

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
ShadowDemo()

Method Summary

Modifier and Type	Method and Description
void	addBackgroundAnnotation()
void	destroy()
String	getAppletInfo()
void	init()
static void	main(String[] args)
void	mouseClicked(MouseEvent e) MouseListener Implementation
void	mouseDragged(MouseEvent e) MouseMotionListener Implementation
void	mouseEntered(MouseEvent e)
void	mouseExited(MouseEvent e)
void	mouseMoved(MouseEvent e)
void	mousePressed(MouseEvent e)
void	mouseReleased(MouseEvent e)
void	rangeChanged(com.affymetrix.genoviz.event.NeoRangeEvent evt) RangeListener Implementation
com.affymetrix.genoviz.widget.NeoMap	setUpMap(String seqstring)
com.affymetrix.genoviz.bioviews.GlyphI	setUpShadowRect(com.affymetrix.genoviz.widget.NeoSeq source, com.affymetrix.genoviz.widget.NeoMap destination) Sets up a shadow of the source on the destination
void	start()
void	stop()

Methods inherited from class javax.swing.JApplet

addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.applet.Applet

getAppletContext, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, isActive, isValidateRoot, newAudioClip, play, play, resize, resize, setStub, showStatus

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, revalidate, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

mapview

protected com.affymetrix.genoviz.widget.NeoMap mapview

seqview

protected com.affymetrix.genoviz.widget.NeoSeq seqview

shadowRect

protected com.affymetrix.genoviz.bioviews.GlyphI shadowRect

mapframe

protected Panel mapframe

annotations

protected Vector annotations

sizeL

protected Label sizeL

spacingL

protected Label spacingL

stripeL

protected Label stripeL

firstL

protected Label firstL

lastL

protected Label lastL

sizeT

protected TextField sizeT

spacingT

protected TextField spacingT

stripeT

protected TextField stripeT

visibleB

protected Button visibleB

selectedB

protected Button selectedB

removeAnnotB

protected Button removeAnnotB

addTextAnnotB

protected Button addTextAnnotB

addBackAnnotB

protected Button addBackAnnotB

orientL

protected Label orientL

orientC

protected Choice orientC

fontL

protected Label fontL

fontC

protected Choice fontC

seq

protected String seq

seq2

protected String seq2

seq3

protected String seq3

newseq

protected String newseq

num_left

protected boolean num_left

text_annot_color

protected Color text_annot_color

back_annot_color

protected Color back_annot_color

mouse_offset

protected double mouse_offset

Constructor Detail

ShadowDemo

public ShadowDemo()

Method Detail

getAppletInfo

public String getAppletInfo()

Overrides:

getAppletInfo in class Applet

main

public static void main(String[] args)

init

public void init()

Overrides:

init in class Applet

start

public void start()

Overrides:

start in class Applet

stop

public void stop()

Overrides:

stop in class Applet

destroy

public void destroy()

Overrides:

destroy in class Applet

addBackgroundAnnotation

public void addBackgroundAnnotation()

setUpMap

public com.affymetrix.genoviz.widget.NeoMap setUpMap(String seqstring)

setUpShadowRect

public com.affymetrix.genoviz.bioviews.GlyphI setUpShadowRect(com.affymetrix.genoviz.widget.NeoSeq source,
                                                              com.affymetrix.genoviz.widget.NeoMap destination)

Sets up a shadow of the source on the destination

mouseDragged

public void mouseDragged(MouseEvent e)

MouseMotionListener Implementation

Specified by:

mouseDragged in interface MouseMotionListener

mouseMoved

public void mouseMoved(MouseEvent e)

Specified by:

mouseMoved in interface MouseMotionListener

mouseClicked

public void mouseClicked(MouseEvent e)

MouseListener Implementation

Specified by:

mouseClicked in interface MouseListener

mouseEntered

public void mouseEntered(MouseEvent e)

Specified by:

mouseEntered in interface MouseListener

mouseExited

public void mouseExited(MouseEvent e)

Specified by:

mouseExited in interface MouseListener

mousePressed

public void mousePressed(MouseEvent e)

Specified by:

mousePressed in interface MouseListener

mouseReleased

public void mouseReleased(MouseEvent e)

Specified by:

mouseReleased in interface MouseListener

rangeChanged

public void rangeChanged(com.affymetrix.genoviz.event.NeoRangeEvent evt)

RangeListener Implementation

Specified by:

rangeChanged in interface com.affymetrix.genoviz.event.NeoRangeListener