com.affymetrix.genoviz.demo

Class ResiduePainterExample

java.lang.Object

com.affymetrix.genoviz.demo.ResiduePainterExample

All Implemented Interfaces:

com.affymetrix.genoviz.bioviews.ResiduePainter

public class ResiduePainterExample
extends Object
implements com.affymetrix.genoviz.bioviews.ResiduePainter

a simple ResiduePainter just ignores consensus, and colors all the residues white except that it colors AG and GT blue/green (potential splice sites?) (not that I'm recommending this as a good way of displaying splice sites -- I just needed an example that didn't require a more sophisticated datamodel external to the widgets)

Constructor Summary

Constructors

Constructor and Description
ResiduePainterExample()

Method Summary

Modifier and Type	Method and Description
void	calculateColors(Color[] color_array, String residue_string, String consensus_string, int residue_start, int consensus_start)
void	calculateColors(Object dataModel, Color[] color_array, String residue_string, String consensus_string, int residue_start, int consensus_start)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ResiduePainterExample

public ResiduePainterExample()

Method Detail

calculateColors

public void calculateColors(Color[] color_array,
                            String residue_string,
                            String consensus_string,
                            int residue_start,
                            int consensus_start)

Specified by:

calculateColors in interface com.affymetrix.genoviz.bioviews.ResiduePainter

calculateColors

public void calculateColors(Object dataModel,
                            Color[] color_array,
                            String residue_string,
                            String consensus_string,
                            int residue_start,
                            int consensus_start)

Specified by:

calculateColors in interface com.affymetrix.genoviz.bioviews.ResiduePainter