com.affymetrix.genoviz.demo.adapter

Class AnnotationAdapter

java.lang.Object

com.affymetrix.genoviz.demo.adapter.AnnotationAdapter

All Implemented Interfaces:

com.affymetrix.genoviz.bioviews.NeoDataAdapterI

public class AnnotationAdapter
extends Object
implements com.affymetrix.genoviz.bioviews.NeoDataAdapterI

an almost trivial example of a DataAdapter most of the work is done by a MapGlyphFactory the one thing this adapter knows is that the datamodel objects implement the AnnotationI interface, and therefore can create the proper glyph and add it to the map by: MapGlyphFactory.makeGlyph(AnnotationI.getStart(), AnnotationI.getEnd());

Field Summary

Fields

Modifier and Type	Field and Description
protected com.affymetrix.genoviz.bioviews.MapGlyphFactory	factory
protected com.affymetrix.genoviz.bioviews.Scene	scene need a Scene to set up MapGlyphFactory (which needs to know which scene it is building glyphs for, in order to pack the glyph relative to other glyphs [actually, should really need to know the View that it should base its packing on, but for now we consider the simpler case where it packs to the first view of the scene])

Constructor Summary

Constructors

Constructor and Description
AnnotationAdapter()

Method Summary

Modifier and Type	Method and Description
boolean	accepts(Object obj)
void	configure(Hashtable options)
void	configure(String options)
com.affymetrix.genoviz.bioviews.GlyphI	createGlyph(Object obj)
com.affymetrix.genoviz.bioviews.MapGlyphFactory	getGlyphFactory()
void	setScene(com.affymetrix.genoviz.bioviews.Scene scene)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

factory

protected com.affymetrix.genoviz.bioviews.MapGlyphFactory factory

scene

protected com.affymetrix.genoviz.bioviews.Scene scene

need a Scene to set up MapGlyphFactory (which needs to know which scene it is building glyphs for, in order to pack the glyph relative to other glyphs [actually, should really need to know the View that it should base its packing on, but for now we consider the simpler case where it packs to the first view of the scene])

Constructor Detail

AnnotationAdapter

public AnnotationAdapter()

Method Detail

getGlyphFactory

public com.affymetrix.genoviz.bioviews.MapGlyphFactory getGlyphFactory()

setScene

public void setScene(com.affymetrix.genoviz.bioviews.Scene scene)

Specified by:

setScene in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI

configure

public void configure(String options)

Specified by:

configure in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI

configure

public void configure(Hashtable options)

Specified by:

configure in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI

accepts

public boolean accepts(Object obj)

Specified by:

accepts in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI

createGlyph

public com.affymetrix.genoviz.bioviews.GlyphI createGlyph(Object obj)

Specified by:

createGlyph in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI