com.affymetrix.genoviz.demo.adapter

Class AssemblyAdapter

java.lang.Object

com.affymetrix.genoviz.demo.adapter.AssemblyAdapter

All Implemented Interfaces:

com.affymetrix.genoviz.bioviews.NeoDataAdapterI

public class AssemblyAdapter
extends Object
implements com.affymetrix.genoviz.bioviews.NeoDataAdapterI

Field Summary

Fields

Modifier and Type	Field and Description
protected com.affymetrix.genoviz.widget.NeoAssembler	map

Constructor Summary

Constructors

Constructor and Description
AssemblyAdapter(com.affymetrix.genoviz.widget.NeoAssembler map) Need a constructor that takes a NeoAssembler as a constructor this is really just a usability convenience

Method Summary

Modifier and Type	Method and Description
boolean	accepts(Object obj)
void	configure(Hashtable options)
void	configure(String options)
com.affymetrix.genoviz.bioviews.GlyphI	createGlyph(Object obj) For NeoAssemblyAdapter, multiple glyphs on multiple "inner" scenes are being created.
void	setScene(com.affymetrix.genoviz.bioviews.Scene scene) need to maintain setScene for backward compatibility with NeoDataAdapterI interface

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

map

protected com.affymetrix.genoviz.widget.NeoAssembler map

Constructor Detail

AssemblyAdapter

public AssemblyAdapter(com.affymetrix.genoviz.widget.NeoAssembler map)

Need a constructor that takes a NeoAssembler as a constructor this is really just a usability convenience

Method Detail

configure

public void configure(String options)

Specified by:

configure in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI

configure

public void configure(Hashtable options)

Specified by:

configure in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI

accepts

public boolean accepts(Object obj)

Specified by:

accepts in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI

createGlyph

public com.affymetrix.genoviz.bioviews.GlyphI createGlyph(Object obj)

For NeoAssemblyAdapter, multiple glyphs on multiple "inner" scenes are being created. Therefore createGlyph returns null, and the addition of glyphs to the assembly is considered a side effect

Specified by:

createGlyph in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI

setScene

public void setScene(com.affymetrix.genoviz.bioviews.Scene scene)

need to maintain setScene for backward compatibility with NeoDataAdapterI interface

Specified by:

setScene in interface com.affymetrix.genoviz.bioviews.NeoDataAdapterI