Hierarchy For All Packages

Package Hierarchies:

• com.affymetrix.genoviz.demo,
• com.affymetrix.genoviz.demo.adapter,
• com.affymetrix.genoviz.demo.datamodel,
• com.affymetrix.genoviz.demo.parser,
• com.affymetrix.genoviz.tutorial

Class Hierarchy

• java.lang.Object
  • com.affymetrix.genoviz.demo.parser.AlignmentParser
  • com.affymetrix.genoviz.demo.datamodel.Annotation (implements com.affymetrix.genoviz.demo.datamodel.AnnotationI)
    • com.affymetrix.genoviz.demo.datamodel.ScoredAnnotation (implements com.affymetrix.genoviz.demo.datamodel.ScoredAnnotationI)
    • com.affymetrix.genoviz.demo.datamodel.SequenceAnnotation (implements com.affymetrix.genoviz.demo.datamodel.SequenceAnnotationI)
  • com.affymetrix.genoviz.demo.adapter.AnnotationAdapter (implements com.affymetrix.genoviz.bioviews.NeoDataAdapterI)
  • com.affymetrix.genoviz.demo.adapter.AssemblyAdapter (implements com.affymetrix.genoviz.bioviews.NeoDataAdapterI)
  • com.affymetrix.genoviz.demo.parser.BedFileParser
  • com.affymetrix.genoviz.demo.datamodel.BedSequence
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • java.applet.Applet
          • javax.swing.JApplet (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
            • com.affymetrix.genoviz.tutorial.GlyphTestMap (implements java.awt.event.ActionListener)
              • com.affymetrix.genoviz.tutorial.SimpleMap1
                • com.affymetrix.genoviz.tutorial.SimpleMap3
                  • com.affymetrix.genoviz.tutorial.HairMap
                  • com.affymetrix.genoviz.tutorial.SimpleMap4
                    • com.affymetrix.genoviz.tutorial.SequenceMap0
                      • com.affymetrix.genoviz.tutorial.SequenceMap1 (implements com.affymetrix.genoviz.event.NeoRangeListener)
              • com.affymetrix.genoviz.tutorial.SimpleSelectableMap (implements com.affymetrix.genoviz.event.NeoRubberBandListener)
            • com.affymetrix.genoviz.demo.GraphDemo (implements java.awt.event.ComponentListener)
            • com.affymetrix.genoviz.tutorial.HelloMap
            • com.affymetrix.genoviz.demo.NeoAssemblerDemo (implements java.awt.event.ActionListener, java.awt.event.MouseListener, com.affymetrix.genoviz.event.NeoRangeListener, java.awt.event.WindowListener)
            • com.affymetrix.genoviz.demo.NeoAssemblerDemo2 (implements java.awt.event.MouseListener, com.affymetrix.genoviz.event.NeoRangeListener)
            • com.affymetrix.genoviz.tutorial.NeoDraw (implements java.awt.event.ActionListener, java.awt.event.ItemListener, com.affymetrix.genoviz.event.NeoRubberBandListener)
            • com.affymetrix.genoviz.demo.NeoMapDemo (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.MouseListener, com.affymetrix.genoviz.event.NeoRubberBandListener)
            • com.affymetrix.genoviz.demo.NeoQuallerDemo2 (implements java.awt.event.ActionListener, com.affymetrix.genoviz.event.NeoRangeListener)
            • com.affymetrix.genoviz.demo.ShadowDemo (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, com.affymetrix.genoviz.event.NeoRangeListener)
            • com.affymetrix.genoviz.tutorial.SimpleMap (implements java.awt.event.ActionListener)
            • com.affymetrix.genoviz.tutorial.TutorialAssmblr
            • com.affymetrix.genoviz.demo.VerticalMapDemo
          • com.affymetrix.genoviz.demo.NeoQuallerDemo (implements java.awt.event.ActionListener, com.affymetrix.genoviz.event.NeoRangeListener)
          • com.affymetrix.genoviz.demo.NeoSeqDemo (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
          • com.affymetrix.genoviz.demo.NeoTracerDemo (implements java.awt.event.ActionListener, java.awt.event.ComponentListener, com.affymetrix.genoviz.event.NeoRangeListener)
          • com.affymetrix.genoviz.tutorial.ParseOne
          • com.affymetrix.genoviz.tutorial.SimpleMap0 (implements java.awt.event.ActionListener)
            • com.affymetrix.genoviz.tutorial.SimpleMap2
          • com.affymetrix.genoviz.tutorial.SimpleMap5
          • com.affymetrix.genoviz.tutorial.SimpleMap6
          • com.affymetrix.genoviz.demo.TieredMapDemo (implements java.awt.event.ActionListener, java.awt.event.MouseListener)
          • com.affymetrix.genoviz.tutorial.TutorialGlyphDemo
          • com.affymetrix.genoviz.tutorial.TutorialGlyphDemo2
          • com.affymetrix.genoviz.tutorial.TutorialQualler (implements java.awt.event.ActionListener)
          • com.affymetrix.genoviz.tutorial.TutorialTracer (implements java.awt.event.ActionListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • com.affymetrix.genoviz.tutorial.BedSequenceDemo
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • com.affymetrix.genoviz.tutorial.MapHandler (implements com.affymetrix.genoviz.parser.ContentParser)
  • com.affymetrix.genoviz.bioviews.Glyph (implements com.affymetrix.genoviz.bioviews.GlyphI)
    • com.affymetrix.genoviz.glyph.SolidGlyph
      • com.affymetrix.genoviz.tutorial.RoundedRect
      • com.affymetrix.genoviz.tutorial.ScaleText
  • com.affymetrix.genoviz.tutorial.NarcissusParser (implements com.affymetrix.genoviz.parser.ContentParser)
  • com.affymetrix.genoviz.demo.ResiduePainterExample (implements com.affymetrix.genoviz.bioviews.ResiduePainter)
  • com.affymetrix.genoviz.demo.adapter.ScoredAnnotAdapter (implements com.affymetrix.genoviz.bioviews.NeoDataAdapterI)
  • com.affymetrix.genoviz.demo.adapter.SequenceAnnotAdapter (implements com.affymetrix.genoviz.bioviews.NeoDataAdapterI)
  • com.affymetrix.genoviz.demo.parser.SequenceParser
  • com.affymetrix.genoviz.demo.StartCodonPainter (implements com.affymetrix.genoviz.bioviews.ResiduePainter)

Interface Hierarchy

• com.affymetrix.genoviz.demo.datamodel.AnnotationI
  • com.affymetrix.genoviz.demo.datamodel.ScoredAnnotationI
  • com.affymetrix.genoviz.demo.datamodel.SequenceAnnotationI